As a Senior Machine Learning Engineer at The Marlin Alliance, your daily work will be highly dynamic, bridging high-level software architecture with hands-on physical integration. Your primary responsibility is to design, develop, and implement machine learning models and mathematical algorithms specifically tailored for naval applications. This involves taking raw, complex maritime data and transforming it through rigorous feature engineering, preprocessing, and validation into robust predictive models.

You will not work in isolation. A significant portion of your role involves close collaboration with software engineers, systems architects, data scientists, and Navy mission stakeholders. You will translate operational military requirements into technical specifications, ensuring that the AI solutions you deliver are practical, reliable, and aligned with fleet needs. This includes developing cloud-native ML pipelines using platforms like AWS or Azure, and packaging solutions using Docker and Kubernetes to ensure they can run seamlessly across diverse environments.

Furthermore, you will actively contribute to the team's DevSecOps culture by participating in CI/CD pipeline development, automating testing processes, and applying strict cybersecurity principles to your software designs. You will also be responsible for generating high-quality technical reports, engineering artifacts, and documentation that comply with PMAT and government standards.

Finally, this role features a unique physical component. To ensure your models perform in the real world, you will occasionally travel (approximately 15%) to customer locations such as San Diego, Arlington, Colorado Springs, or Charleston. You will perform required work aboard Navy vessels, which includes navigating narrow passageways, ascending and descending shipboard ladders, working in confined spaces, and operating in variable sea conditions while carrying tools and equipment weighing up to 50 lbs.

To be competitive for the Machine Learning Engineer position at The Marlin Alliance, you must meet a stringent set of technical, physical, and security requirements.

Must-Have Skills & Qualifications

• Experience: 10+ years of professional experience working as a machine learning engineer, data scientist, software engineer, or data engineer.
• Programming: Strong, production-grade programming skills in Python, along with proficiency in at least one compiled language such as Java, C++, Go, or Rust.
• ML Frameworks: Proven experience developing and deploying models using frameworks like TensorFlow, PyTorch, or scikit-learn.
• Cloud & Containers: Hands-on experience with cloud platforms (AWS or Azure) and containerization technologies (Docker, Kubernetes).
• Software Engineering: Deep familiarity with software engineering best practices, including Git, CI/CD pipelines (Jenkins, GitHub Actions, GitLab CI), and automated testing.
• Citizenship & Clearance: US Citizenship is strictly required (no dual citizenship), along with an active Secret security clearance (TS/SCI highly preferred).
• Physical Demands: Ability to safely carry up to 50 lbs of equipment, ascend/descend steep shipboard ladders, navigate narrow passageways, and work aboard Navy vessels under variable sea conditions.
• Education: Bachelor of Science degree in Computer Science, Machine Learning, Data Science, Artificial Intelligence, Statistics, or a closely related technical field.

Nice-to-Have Skills & Qualifications

• DoD Experience: Previous experience supporting NAVWAR, NIWC Pacific, or other Navy Command and Control (C2) / ISR programs.
• Secure MLOps: Familiarity with DoD AI strategies, secure MLOps frameworks, and deploying software in secure, air-gapped, or classified environments.
• Advanced Degrees: Master’s or Ph.D. in Computer Science, Machine Learning, or a highly quantitative field.
• Certifications: Professional certifications in cloud computing (AWS/Azure), DevSecOps, cybersecurity, or AI/ML.

Q: What is the work environment like for this role? A: This is an on-site position located at NAVWAR in San Diego, CA. While much of your time will be spent in a professional office environment, the role requires approximately 15% travel to customer sites and active participation in testing evolutions aboard Navy vessels, which can involve confined spaces and variable sea conditions.

Q: How technical is the interview process? A: The process is highly technical and rigorous. Given the senior nature of the role (10+ years of experience required), you will be evaluated extensively on your software engineering practices, your ability to write clean code in multiple languages, and your systems architecture design skills, in addition to core machine learning concepts.

Q: What is the typical timeline from the first interview to an offer? A: The timeline can vary depending on contract requirements and security clearance verification. While the technical stages typically move within a few weeks, candidates should maintain proactive communication with their recruiter, as government-adjacent hiring pipelines can sometimes experience administrative delays.

Q: Is a security clearance absolutely required to apply? A: Yes. You must possess an active Secret clearance at a minimum to be considered, and a TS/SCI clearance is highly preferred. Due to the sensitive nature of the projects, US citizenship is mandatory, and dual citizens cannot be cleared.

To maximize your chances of success when interviewing at The Marlin Alliance, keep these strategic tips in mind:

• Highlight Secure DevSecOps: Do not talk about machine learning as an academic exercise. Emphasize your experience building secure, automated pipelines. Discuss how you integrate security scanning, container vulnerability checks, and automated testing into your deployment workflows.
• Demonstrate Adaptability: The defense space moves quickly, and requirements can change rapidly based on operational needs. Share concrete examples of how you have successfully navigated shifting priorities, ambiguous requirements, or sudden technical pivots in past roles.
• Be Proactive in Follow-Ups: Real-world candidate experiences suggest that communication during the recruitment process can occasionally experience delays. If you are told you will hear back within a certain timeframe, do not hesitate to send a polite, professional follow-up email to your recruiter to keep the process moving.

• Show Physical and Tactical Readiness: Acknowledge and embrace the shipboard testing requirements of the role. Explain how you have successfully deployed or tested technology in the field, outside of a comfortable office setting, to show you are ready for the physical demands of naval integration.

The Senior Machine Learning Engineer position at The Marlin Alliance is an extraordinary opportunity for an experienced engineer to apply cutting-edge artificial intelligence directly to national defense. By designing and deploying robust, containerized ML pipelines for NAVWAR and NIWC Pacific, you will help shape the future of naval digital transformation.

To succeed in this interview process, focus on demonstrating a strong balance of production-grade software engineering, secure MLOps architecture, and a deep alignment with the Navy's operational mission. Ensure your technical preparation covers both core machine learning frameworks (PyTorch, TensorFlow) and systems-level tools (Docker, Kubernetes, CI/CD, and multi-language development).

For more detailed candidate reviews, interview strategies, and salary benchmarks, you can explore additional resources on Dataford. With focused preparation, a clear understanding of the secure defense landscape, and a strong presentation of your technical leadership, you can confidently navigate the interview process and secure your place on this mission-critical team.

The compensation data above reflects the salary ranges for machine learning engineering roles at The Marlin Alliance in San Diego, CA. For a senior-level position requiring over 10 years of experience and an active security clearance, candidates should expect compensation to align with the upper tiers of this range, reflecting the highly specialized technical and physical demands of the role.