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SQL Deduplication for Longitudinal Data
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SQL Deduplication for Longitudinal Data

HardSQL · PostgreSQL

Problem

Write a SQL query to identify and remove duplicate patient records while preserving the integrity of longitudinal study data.

The canonical record is the record with the lowest patient_id among patients sharing the same identifying details. Reassign all study visits from duplicate records before removing those records.

Output

  1. One row per removed duplicate, with removed_patient_id and canonical_patient_id.
  2. Exclude canonical and non-duplicate patient records.
  3. Order by removed_patient_id ascending.

Schema

patient_records
ColumnTypeDescription
patient_idPKINTEGERUnique patient record identifier
first_nameVARCHAR(80)Patient first name
last_nameVARCHAR(80)Patient last name
date_of_birthDATEPatient date of birth
site_codeVARCHAR(20)Clinical study site identifier
study_visits
ColumnTypeDescription
visit_idPKINTEGERUnique study visit identifier
patient_idINTEGERReferenced patient record, nullable for an unmatched imported visit
visit_dateDATEDate of the study visit
visit_typeVARCHAR(40)Study visit classification
Tablespatient_recordsstudy_visits
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CodePostgreSQL
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